Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs76649131 chr11:99274718 A/G 1.56E-12 392 14.55 13.57 2.5 KM Plot
STAD rs76683399 chr3:97036737 A/G 2.24E-8 399 14.22 17.1 3.25 KM Plot
STAD rs76978751 chr1:227335644 G/A 0 405 14.42 14.07 1.48 KM Plot
STAD rs77314276 chr4:53668327 A/C 2.48E-6 400 14.07 18.4 6.17 KM Plot
STAD rs77579349 chr6:34480473 C/A 3.15E-5 393 14.23 12.8 3.5 KM Plot
STAD rs7778923 chr7:148976396 T/C 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs7780661 chr7:148970459 A/G 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs7788681 chr7:148976137 C/T 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs7789911 chr7:148981338 G/A 4.52E-5 405 14.22 16.38 3.43 KM Plot
STAD rs7791860 chr7:148973045 A/G 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs7797046 chr7:148970514 G/A 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs7798928 chr7:148970976 C/G 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs78065573 chr6:90289996 G/A 1.58E-5 396 14.02 16.9 2.73 KM Plot
STAD rs7806827 chr7:148976009 A/C 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs78335667 chr1:227287313 C/T 0 406 14.37 14.07 1.48 KM Plot